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Easyfig

Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface (GUI).

For installation instructions and downloadable files, click Files/Manual.

colour_comparison

Comparison of two bacteriophage

full_genome_with_graph

Comparison of three E. coli with GC content of top genome plotted.

Updates

21st April 2012 - Easyfig 2.1

Bug fixes
  • Improved reliability of automatically downloading blast
  • Gene legends now ordered by postion
  • Subregion menu fixed
  • Fixed "New Figure" not resetting preferences
  • Fixed feature outline thickness
  • Bottom feature labels orientated correctly
  • Fixed incorrect error message when using own blast files

9 March 2012 - Easyfig 2.0

Easyfig 2.0 has now been released

New in this version
  • Easyfig can now create gene legends or label genes
  • New easier to use interface
  • Support for up to 99 genomes
  • Save and set default preferences
  • Automatically download and installs BLAST+
  • Support for .crunch files
  • Increased Stability

Referencing Easyfig

If Easyfig is used to generate figures for publication, please cite our paper:

Sullivan MJ, Petty NK, Beatson SA. (2011) Easyfig: a genome comparison visualiser. Bioinformatics; 27 (7): 1009-1010.

PMID: 21278367